STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT33284.1Hypothetical protein. (527 aa)    
Predicted Functional Partners:
GAT33287.1
Bacteriophage head to tail connecting protein.
 
     0.859
GAT33283.1
Hypothetical protein.
       0.778
GAT33285.1
Hypothetical protein.
       0.773
GAT33286.1
Hypothetical protein.
       0.773
GAT34060.1
Putative DNA primase/helicase.
 
     0.679
GAT35611.1
Bacteriophage head to tail connecting protein.
 
     0.650
GAT32334.1
Bacteriophage head to tail connecting protein.
 
     0.646
GAT33288.1
Hypothetical protein.
       0.613
GAT33289.1
Hypothetical protein.
       0.613
GAT33290.1
Hypothetical protein.
       0.613
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.