STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT33388.1N-acetylmuramoyl-L-alanine amidase. (372 aa)    
Predicted Functional Partners:
GAT33389.1
Porin; Belongs to the OprB family.
       0.625
GAT34933.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
 
     0.558
TSACC_343
Outer membrane lipoprotein-sorting protein.
    
   0.521
GAT33200.1
Hypothetical protein.
 
     0.475
GAT33390.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
       0.473
GAT33184.1
NlpC/P60 family protein.
  
 
 0.437
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
     0.434
GAT35148.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 
0.413
GAT34344.1
Hypothetical protein.
   
   0.407
GAT35385.1
Membrane associated serine protease, rhomboid family.
   
   0.407
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.