Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT33678.1PAS domain S-box-containing protein. (1030 aa)    
Predicted Functional Partners:
GAT34258.1
PAS domain S-box-containing protein.
 
0.999
GAT32372.1
PAS domain S-box-containing protein.
 
0.999
GAT32764.1
PAS domain S-box-containing protein.
 
0.998
GAT33113.1
PAS domain S-box-containing protein.
 
0.998
GAT35053.1
Signal transduction histidine kinase.
 
0.997
GAT33147.1
Signal transduction histidine kinase.
 
0.996
GAT33615.1
PAS domain S-box-containing protein.
 
0.996
GAT34935.1
Ammonium transporter.
 0.996
GAT34417.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
0.994
GAT31729.1
PAS domain S-box-containing protein.
 
0.992
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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