STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT31823.1AraC-type DNA-binding protein. (300 aa)    
Predicted Functional Partners:
GAT32500.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.786
GAT35291.1
AraC-type DNA-binding protein.
  
   0.774
TSACC_198
AraC-type DNA-binding protein.
  
   0.773
GAT34381.1
AraC-type DNA-binding protein.
  
  
  0.763
GAT32669.1
AraC family transcriptional regulator.
  
 
   0.762
GAT34392.1
AraC-type DNA-binding protein.
  
     0.756
GAT32307.1
Helix-turn-helix domain-containing protein.
  
     0.756
GAT35174.1
AraC-type DNA-binding protein.
  
    0.756
GAT33623.1
Helix-turn-helix domain-containing protein.
  
   0.755
GAT31874.1
AraC-type DNA-binding protein.
  
     0.749
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.