STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT33808.1Transglutaminase-like enzyme, putative cysteine protease. (291 aa)    
Predicted Functional Partners:
GAT34652.1
Hypothetical protein.
    0.978
GAT33809.1
Hypothetical protein.
 
  
 0.966
GAT33806.1
Hypothetical protein.
 
     0.933
GAT33807.1
Transglutaminase-like enzyme, putative cysteine protease.
 
    
0.838
GAT34653.1
Hypothetical protein.
 
    0.793
GAT34030.1
Transglutaminase-like enzyme, putative cysteine protease.
  
     0.756
rplM
Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.550
GAT33811.1
Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.550
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.