STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT34565.1Circadian clock protein KaiC. (551 aa)    
Predicted Functional Partners:
GAT32690.1
Circadian clock protein KaiB.
 
 
 
 0.965
GAT32691.1
Circadian clock protein KaiB.
 
 
 
 0.964
GAT34564.1
Signal transduction histidine kinase.
       0.794
TSACC_199
PAS domain S-box-containing protein.
   
 
 0.697
GAT32692.1
PAS domain S-box-containing protein.
   
 
 0.589
GAT34050.1
Two-component system, OmpR family.
   
 
 0.564
GAT33906.1
Two-component system, chemotaxis family.
   
 
 0.541
GAT34566.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.526
GAT34370.1
PAS domain S-box-containing protein.
   
   0.504
GAT34415.1
Response regulator receiver domain-containing protein.
    
   0.487
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.