Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAT34571.1Putative DNA-binding domain-containing protein. (332 aa)    
Predicted Functional Partners:
GAT34570.1
Hypothetical protein.
 
  
 0.981
GAT34568.1
Putative oxidoreductase.
 
  
 0.858
GAT33103.1
Heparinase II/III-like protein.
   
    0.542
GAT31555.1
Putative oxidoreductase.
  
  
 0.457
GAT34009.1
Putative oxidoreductase.
  
  
 0.457
GAT35505.1
ATP-dependent exoDNAse (exonuclease V) beta subunit; Belongs to the helicase family. UvrD subfamily.
 
     0.408
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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