STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSACC_234Hypothetical protein. (601 aa)    
Predicted Functional Partners:
GAT31971.1
ABC-type transport system.
  
 0.952
TSACC_248
Uroporphyrinogen III methyltransferase.
  
    0.754
GAT33094.1
Hypothetical protein.
  
     0.677
GAT32948.1
Cytochrome c oxidase assembly protein subunit 15.
  
     0.662
GAT34120.1
Outer membrane assembly lipoprotein YfiO.
  
     0.617
GAT33838.1
Hypothetical protein.
  
     0.561
TSACC_235
Hypothetical protein.
       0.552
GAT32836.1
LPS assembly outer membrane protein LptD.
 
     0.535
GAT34186.1
Hypothetical protein.
  
     0.498
TSACC_170
Universal stress protein family protein.
  
     0.490
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.