Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSACC_241Hypothetical protein. (480 aa)    
Predicted Functional Partners:
TSACC_240
ABC-2 type transport system ATP-binding protein.
  
  0.865
TSACC_238
Hypothetical protein.
       0.787
TSACC_237
MoxR-like ATPase.
       0.777
TSACC_239
Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
       0.773
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
  
    0.773
TSACC_243
Hypothetical protein.
       0.705
TSACC_244
Hypothetical protein.
       0.705
TSACC_245
Penicillin-binding protein 1C.
       0.705
TSACC_236
N-acetylmuramoyl-L-alanine amidase.
       0.540
GAT34207.1
ABC-type multidrug transport system, ATPase component.
  
  0.424
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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