STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT32084.1Fe-S cluster assembly protein SufB. (470 aa)    
Predicted Functional Partners:
GAT32085.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
GAT34620.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.969
TSACC_111
Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.949
GAT32083.1
Fe-S cluster assembly protein SufD.
 
    
0.856
GAT34619.1
Nitrogen fixation protein NifU.
 
  
 0.783
GAT31928.1
Probable FeS assembly SUF system protein SufT.
 
   
 0.746
GAT32086.1
Fur family transcriptional regulator, peroxide stress response regulator; Belongs to the Fur family.
     
 0.738
GAT33247.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.726
GAT31929.1
Nitrogen fixation protein NifU.
  
  
 0.680
GAT32858.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.550
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.