Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TSACC_265Polar amino acid transport system permease protein. (238 aa)    
Predicted Functional Partners:
TSACC_266
Polar amino acid transport system substrate-binding protein.
  0.999
TSACC_264
Polar amino acid transport system ATP-binding protein.
 0.996
GAT33007.1
Polar amino acid transport system ATP-binding protein.
 0.989
GAT33006.1
Polar amino acid transport system substrate-binding protein.
 
 
0.639
GAT33498.1
Ligand-gated ion channel.
 
  0.572
GAT33803.1
Sulfate transport system ATP-binding protein; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.
 
  
  0.551
GAT35193.1
Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.507
GAT33679.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
  0.478
GAT32720.1
Putative ABC transport system ATP-binding protein.
 
   
  0.471
lolD
Putative ABC transport system ATP-binding protein/lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
   
  0.460
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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