Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TSACC_295DEAD/DEAH box helicase domain-containing protein. (180 aa)    
Predicted Functional Partners:
TSACC_296
Tetratricopeptide repeat-containing protein.
       0.773
GAT33490.1
Hypothetical protein.
  
     0.693
GAT33733.1
Hypothetical protein.
  
     0.673
GAT34738.1
formamidopyrimidine-DNA glycosylase.
  
  
 0.669
GAT32836.1
LPS assembly outer membrane protein LptD.
  
     0.638
TSACC_294
Adenylate cyclase.
       0.601
GAT33503.1
Hypothetical protein.
  
     0.555
GAT34186.1
Hypothetical protein.
 
 
   0.549
GAT33094.1
Hypothetical protein.
 
     0.501
GAT34476.1
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
   
    0.501
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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