STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT35141.1Hopanoid biosynthesis associated radical SAM protein HpnH. (429 aa)    
Predicted Functional Partners:
GAT35140.1
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
   
 0.981
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.766
GAT33965.1
Adenosylhomocysteine nucleosidase.
 
     0.761
GAT35142.1
Hypothetical protein.
       0.664
GAT35143.1
Phosphate acetyltransferase.
       0.664
TSACC_324
Farnesyl-diphosphate farnesyltransferase.
 
     0.625
GAT34776.1
Sensor domain CHASE-containing protein.
     
 0.562
GAT33998.1
Predicted exporter.
 
   
 0.507
GAT35144.1
Dihydropteroate synthase.
       0.475
GAT35145.1
DoxX protein.
       0.475
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.