Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSACC_33Biopolymer transport protein ExbD. (133 aa)    
Predicted Functional Partners:
TSACC_34
TonB family C-terminal domain-containing protein.
 
   0.974
TSACC_32
Biopolymer transport protein ExbB.
 
 
 0.973
TSACC_31
Hypothetical protein.
 
     0.916
TSACC_35
Putative porin.
 
     0.914
GAT34240.1
TonB family C-terminal domain-containing protein.
  
   0.890
GAT34242.1
Biopolymer transport protein ExbB.
 
 
 0.890
TSACC_38
Filamentous hemagglutinin family N-terminal domain-containing protein.
 
     0.890
GAT33436.1
Biopolymer transport protein TolQ.
 
   0.856
TSACC_37
Parvulin-like peptidyl-prolyl isomerase.
 
   0.835
TSACC_23
Biopolymer transport protein ExbB.
  
   0.795
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.