STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT35271.1Anti-anti-sigma factor. (179 aa)    
Predicted Functional Partners:
GAT35270.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.939
GAT35053.1
Signal transduction histidine kinase.
  
 
 0.934
GAT32764.1
PAS domain S-box-containing protein.
  
 
 0.923
GAT33113.1
PAS domain S-box-containing protein.
  
 
 0.923
GAT34258.1
PAS domain S-box-containing protein.
  
 
 0.923
GAT32372.1
PAS domain S-box-containing protein.
  
 
 0.923
GAT33145.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
 0.916
GAT33615.1
PAS domain S-box-containing protein.
  
 
 0.907
GAT34935.1
Ammonium transporter.
  
 
 0.907
GAT31960.1
Signal transduction histidine kinase.
  
 
 0.883
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.