STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT35320.1Hypothetical protein. (192 aa)    
Predicted Functional Partners:
GAT35318.1
Outer membrane porin, OprD family.
       0.534
GAT35319.1
Hypothetical protein.
       0.534
GAT33429.1
Hypothetical protein.
  
     0.523
GAT35321.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.515
GAT34046.1
Hypothetical protein.
  
     0.505
GAT35322.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.484
GAT34637.1
Choloylglycine hydrolase.
  
    0.425
GAT34149.1
L,D-transpeptidase catalytic domain cotaining protein.
  
     0.423
GAT35323.1
Hypothetical protein.
       0.423
GAT32790.1
L,D-transpeptidase catalytic domain cotaining protein.
  
     0.418
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.