STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT35427.1Alpha-mannosidase. (995 aa)    
Predicted Functional Partners:
GAT32313.1
Mannosylglycerate hydrolase.
  
     0.771
GAT35429.1
Phosphoglycerate dehydrogenase.
 
     0.710
GAT35428.1
Carbohydrate binding domain-containing protein.
       0.693
GAT35422.1
Type II secretion system protein H.
       0.547
GAT35423.1
Verru_Chthon cassette protein B.
       0.547
GAT35424.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.547
GAT35425.1
Tfp pilus assembly protein PilX.
       0.547
GAT35426.1
Hypothetical protein.
       0.547
GAT32270.1
Glycosyl hydrolase family 20.
 
    0.543
GAT35253.1
Cellulase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.528
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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