STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumC-2Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (467 aa)    
Predicted Functional Partners:
GAT32500.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.958
GAT35404.1
Succinate dehydrogenase / fumarate reductase flavoprotein subunit.
 
 0.877
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 0.873
GAT35403.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 0.845
mqo-2
Malate dehydrogenase.
    
 0.840
GAT35408.1
Malate dehydrogenase.
  
 
 0.831
GAT31887.1
FAD/FMN-containing dehydrogenase.
   
 
 0.788
GAT35585.1
Cupin domain-containing protein.
       0.770
GAT35378.1
Aspartate aminotransferase.
    
  0.755
GAT35586.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
     
 0.753
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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