STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BA893_09035Transposase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (632 aa)    
Predicted Functional Partners:
ANQ23154.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.645
ANQ22148.1
Phage major capsid protein, P2 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.630
ANQ22149.1
Terminase; gpP; P protein; capsid packaging; P protein is probably the ATPase subunit of the terminase complex, which directs cos cleavage of closed monomeric dsDNA circles into linear genomes with 19 nt cohesive ssDNA ends; Q, P and M proteins are needed to package DNA into capsid proheads and conversion into mature capsids; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.626
ANQ22150.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.623
ANQ22153.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.615
ANQ22146.1
Head protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.581
ANQ21806.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.560
ANQ22147.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.485
alaE
Hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.401
Your Current Organism:
Vibrio natriegens
NCBI taxonomy Id: 691
Other names: ATCC 14048, Beneckea natriegens, CAIM 12, CCUG 16371, CCUG 4980 A, CIP 103193, DSM 759, IFO 15636, LMG 10935, LMG:10935, NBRC 15636, NCCB 73019, NCMB 857, NCMB:857, NCTC 11319, Pseudomonas natriegens, V. natriegens
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.