STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VmrAMultidrug efflux protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)    
Predicted Functional Partners:
ANQ23690.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
ANQ24193.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.544
ANQ21619.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.512
tdh
L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
   
  
 0.511
ANQ22490.1
Lipoprotein NlpI; May be involved in cell division.
       0.467
ANQ24925.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.447
ANQ21334.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.446
Your Current Organism:
Vibrio natriegens
NCBI taxonomy Id: 691
Other names: ATCC 14048, Beneckea natriegens, CAIM 12, CCUG 16371, CCUG 4980 A, CIP 103193, DSM 759, IFO 15636, LMG 10935, LMG:10935, NBRC 15636, NCCB 73019, NCMB 857, NCMB:857, NCTC 11319, Pseudomonas natriegens, V. natriegens
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