Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANQ23831.1Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)    
Predicted Functional Partners:
ANQ23832.1
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.987
ANQ23833.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.975
ANQ23830.1
Hemin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.927
BA893_19570
Group II intron reverse transcriptase/maturase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.873
ANQ23834.1
HuvX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.865
ANQ20185.1
HuvX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.820
ANQ24891.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.774
ANQ23835.1
Heme utilization protein HutZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.726
ANQ20333.1
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.714
ANQ23475.1
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.714
Your Current Organism:
Vibrio natriegens
NCBI taxonomy Id: 691
Other names: ATCC 14048, Beneckea natriegens, CAIM 12, CCUG 16371, CCUG 4980 A, CIP 103193, DSM 759, IFO 15636, LMG 10935, LMG:10935, NBRC 15636, NCCB 73019, NCMB 857, NCMB:857, NCTC 11319, Pseudomonas natriegens, V. natriegens
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