STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANQ23864.1C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)    
Predicted Functional Partners:
arcA
Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.678
ANQ23863.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.653
ANQ24392.1
Carbamate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.630
ANQ22679.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.629
ANQ22172.1
Na+/H+ antiporter NhaC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.466
BA893_19775
Ornithine cyclodeaminase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.462
ANQ23862.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.441
ANQ22355.1
Aminobenzoyl-glutamate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
ANQ24676.1
Na+/H+ antiporter NhaC; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.428
Your Current Organism:
Vibrio natriegens
NCBI taxonomy Id: 691
Other names: ATCC 14048, Beneckea natriegens, CAIM 12, CCUG 16371, CCUG 4980 A, CIP 103193, DSM 759, IFO 15636, LMG 10935, LMG:10935, NBRC 15636, NCCB 73019, NCMB 857, NCMB:857, NCTC 11319, Pseudomonas natriegens, V. natriegens
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