Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANQ23969.1Dipeptide epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)    
Predicted Functional Partners:
ANQ23968.1
EBNA-1 nuclear protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.994
ANQ24587.1
EBNA-1 nuclear protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.977
ANQ24588.1
Dipeptide epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.905
ANQ23855.1
Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family.
  
  
 0.666
ANQ23856.1
Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.665
ANQ23967.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
ANQ23966.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
ANQ24589.1
Catalyzes the transamination of D-amino acids and their alpha-keto acids; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.442
ANQ23965.1
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
       0.420
ANQ23859.1
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.405
Your Current Organism:
Vibrio natriegens
NCBI taxonomy Id: 691
Other names: ATCC 14048, Beneckea natriegens, CAIM 12, CCUG 16371, CCUG 4980 A, CIP 103193, DSM 759, IFO 15636, LMG 10935, LMG:10935, NBRC 15636, NCCB 73019, NCMB 857, NCMB:857, NCTC 11319, Pseudomonas natriegens, V. natriegens
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