STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANQ24038.1Nif-specific transcriptional activator NifA; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)    
Predicted Functional Partners:
ANQ24039.1
Nitrogen fixation negative regulator NifL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.904
ANQ22695.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.804
ANQ24037.1
Nitrogen fixation protein NifB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.599
ANQ24036.1
Nitrogen fixation protein NifQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.546
ANQ23367.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.522
ANQ23598.1
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.486
ANQ24020.1
Nitrogen fixation protein NifZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.484
hmp
Nitric oxide dioxygenase; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
     
 0.470
ANQ21790.1
Detoxifies nitric oxide using NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.459
BA893_07725
Dihydroorotate dehydrogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.458
Your Current Organism:
Vibrio natriegens
NCBI taxonomy Id: 691
Other names: ATCC 14048, Beneckea natriegens, CAIM 12, CCUG 16371, CCUG 4980 A, CIP 103193, DSM 759, IFO 15636, LMG 10935, LMG:10935, NBRC 15636, NCCB 73019, NCMB 857, NCMB:857, NCTC 11319, Pseudomonas natriegens, V. natriegens
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