Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANQ24329.1Peptidase S8/S53 subtilisin kexin sedolisin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family. (596 aa)    
Predicted Functional Partners:
ANQ23514.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.737
ANQ23413.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.605
ANQ24269.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.605
ANQ24327.1
Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.572
ANQ23081.1
Alkaline serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.528
ANQ20748.1
Alkaline serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.526
BA893_05925
Restriction endonuclease; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
 
 
0.524
ANQ21601.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.504
ANQ24331.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.500
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
     
 0.485
Your Current Organism:
Vibrio natriegens
NCBI taxonomy Id: 691
Other names: ATCC 14048, Beneckea natriegens, CAIM 12, CCUG 16371, CCUG 4980 A, CIP 103193, DSM 759, IFO 15636, LMG 10935, LMG:10935, NBRC 15636, NCCB 73019, NCMB 857, NCMB:857, NCTC 11319, Pseudomonas natriegens, V. natriegens
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