Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANQ24421.1Cytochrome C biogenesis protein CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)    
Predicted Functional Partners:
ANQ24420.1
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
ANQ23755.1
Protein iolH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.607
ANQ21877.1
Protein iolH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.606
ANQ24423.1
D-arabinitol 4-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.603
xylB
Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.554
ANQ23532.1
Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
ANQ21432.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.462
ANQ24833.1
Major capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.462
ANQ23798.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.421
ANQ24190.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
Your Current Organism:
Vibrio natriegens
NCBI taxonomy Id: 691
Other names: ATCC 14048, Beneckea natriegens, CAIM 12, CCUG 16371, CCUG 4980 A, CIP 103193, DSM 759, IFO 15636, LMG 10935, LMG:10935, NBRC 15636, NCCB 73019, NCMB 857, NCMB:857, NCTC 11319, Pseudomonas natriegens, V. natriegens
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