H696_00276 protein (Fonticula alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H696_00276

Ribosomal RNA large subunit methyltransferase J. (303 aa)

Predicted Functional Partners:

H696_00903

0.972

H696_05654

0.848

H696_03867

0.845

H696_02591

0.845

H696_06227

0.827

H696_04787

0.813

H696_00311

0.812

H696_00813

0.802

H696_01118

0.792

H696_03744

0.787

Your Current Organism:

Fonticula alba

NCBI taxonomy Id: 691883
Other names: F. alba

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H696_00276	H696_00311	A0A058ZGS9	A0A058ZGW8	Ribosomal RNA large subunit methyltransferase J.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.812
H696_00276	H696_00813	A0A058ZGS9	A0A058ZH29	Ribosomal RNA large subunit methyltransferase J.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.802
H696_00276	H696_00903	A0A058ZGS9	A0A058ZG71	Ribosomal RNA large subunit methyltransferase J.	Uncharacterized protein.	0.972
H696_00276	H696_01118	A0A058ZGS9	A0A058ZB93	Ribosomal RNA large subunit methyltransferase J.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.792
H696_00276	H696_02591	A0A058ZGS9	A0A058Z816	Ribosomal RNA large subunit methyltransferase J.	tRNA (adenine(58)-N(1))-methyltransferase.	0.845
H696_00276	H696_03744	A0A058ZGS9	A0A058Z704	Ribosomal RNA large subunit methyltransferase J.	UPF0020 domain-containing protein.	0.787
H696_00276	H696_03867	A0A058ZGS9	A0A058Z693	Ribosomal RNA large subunit methyltransferase J.	Nop domain-containing protein.	0.845
H696_00276	H696_04787	A0A058ZGS9	A0A058Z323	Ribosomal RNA large subunit methyltransferase J.	Fibrillarin-like pre-rRNA processing protein.	0.813
H696_00276	H696_05654	A0A058ZGS9	A0A058Z1X5	Ribosomal RNA large subunit methyltransferase J.	Uncharacterized protein.	0.848
H696_00276	H696_06227	A0A058ZGS9	A0A058YZC2	Ribosomal RNA large subunit methyltransferase J.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.	0.827
H696_00311	H696_00276	A0A058ZGW8	A0A058ZGS9	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Ribosomal RNA large subunit methyltransferase J.	0.812
H696_00311	H696_00813	A0A058ZGW8	A0A058ZH29	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.998
H696_00311	H696_00903	A0A058ZGW8	A0A058ZG71	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein.	0.669
H696_00311	H696_01118	A0A058ZGW8	A0A058ZB93	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.638
H696_00311	H696_02591	A0A058ZGW8	A0A058Z816	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	tRNA (adenine(58)-N(1))-methyltransferase.	0.965
H696_00311	H696_03744	A0A058ZGW8	A0A058Z704	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	UPF0020 domain-containing protein.	0.900
H696_00311	H696_03867	A0A058ZGW8	A0A058Z693	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Nop domain-containing protein.	0.475
H696_00311	H696_05654	A0A058ZGW8	A0A058Z1X5	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein.	0.952
H696_00311	H696_06227	A0A058ZGW8	A0A058YZC2	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.	0.858
H696_00813	H696_00276	A0A058ZH29	A0A058ZGS9	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Ribosomal RNA large subunit methyltransferase J.	0.802