H696_00838 protein (Fonticula alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H696_00838

ABC transporter domain-containing protein. (1087 aa)

Predicted Functional Partners:

H696_03890

0.593

H696_00160

0.539

H696_02740

0.534

H696_04632

0.518

H696_02892

0.518

H696_01644

0.518

H696_04968

0.510

H696_05832

0.485

H696_05550

0.485

H696_01040

0.485

Your Current Organism:

Fonticula alba

NCBI taxonomy Id: 691883
Other names: F. alba

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H696_00160	H696_00838	A0A058ZDY1	A0A058ZH83	Aamy domain-containing protein.	ABC transporter domain-containing protein.	0.539
H696_00160	H696_02740	A0A058ZDY1	A0A058Z7Y6	Aamy domain-containing protein.	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	0.505
H696_00838	H696_00160	A0A058ZH83	A0A058ZDY1	ABC transporter domain-containing protein.	Aamy domain-containing protein.	0.539
H696_00838	H696_01040	A0A058ZH83	A0A058ZB50	ABC transporter domain-containing protein.	Response regulatory domain-containing protein.	0.485
H696_00838	H696_01644	A0A058ZH83	A0A058ZCY4	ABC transporter domain-containing protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.518
H696_00838	H696_02740	A0A058ZH83	A0A058Z7Y6	ABC transporter domain-containing protein.	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	0.534
H696_00838	H696_02892	A0A058ZH83	A0A058Z8Y5	ABC transporter domain-containing protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.518
H696_00838	H696_03890	A0A058ZH83	A0A058Z5V2	ABC transporter domain-containing protein.	Uncharacterized protein.	0.593
H696_00838	H696_04632	A0A058ZH83	A0A058Z4L6	ABC transporter domain-containing protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.518
H696_00838	H696_04968	A0A058ZH83	A0A058Z576	ABC transporter domain-containing protein.	Response regulatory domain-containing protein.	0.510
H696_00838	H696_05550	A0A058ZH83	A0A058Z1K4	ABC transporter domain-containing protein.	Protein-serine/threonine kinase.	0.485
H696_00838	H696_05832	A0A058ZH83	A0A058Z0C3	ABC transporter domain-containing protein.	Protein-serine/threonine kinase.	0.485
H696_01040	H696_00838	A0A058ZB50	A0A058ZH83	Response regulatory domain-containing protein.	ABC transporter domain-containing protein.	0.485
H696_01040	H696_04968	A0A058ZB50	A0A058Z576	Response regulatory domain-containing protein.	Response regulatory domain-containing protein.	0.703
H696_01644	H696_00838	A0A058ZCY4	A0A058ZH83	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ABC transporter domain-containing protein.	0.518
H696_02740	H696_00160	A0A058Z7Y6	A0A058ZDY1	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	Aamy domain-containing protein.	0.505
H696_02740	H696_00838	A0A058Z7Y6	A0A058ZH83	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	ABC transporter domain-containing protein.	0.534
H696_02740	H696_04968	A0A058Z7Y6	A0A058Z576	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	Response regulatory domain-containing protein.	0.412
H696_02892	H696_00838	A0A058Z8Y5	A0A058ZH83	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ABC transporter domain-containing protein.	0.518
H696_03890	H696_00838	A0A058Z5V2	A0A058ZH83	Uncharacterized protein.	ABC transporter domain-containing protein.	0.593