STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG55_02455GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
BG55_09275
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
BG55_02460
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.735
BG55_01420
Xanthine hydroxylase reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.648
BG55_17340
Transcriptional regulator; Catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.619
BG55_19990
Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.548
BG55_12470
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.523
BG55_18955
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.478
BG55_02395
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.471
lldD
Lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
 
  
 0.469
BG55_20090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.432
Your Current Organism:
Erwinia mallotivora
NCBI taxonomy Id: 69222
Other names: ATCC 29573, CFBP 2503, CIP 105197, DSM 4565, E. mallotivora, ICMP 5705, LMG 2708, LMG:2708, NCPPB 2851
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.