STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG55_04215Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)    
Predicted Functional Partners:
BG55_04210
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.979
BG55_04205
Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.959
BG55_04220
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
BG55_04235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.932
BG55_17040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.908
BG55_19315
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.906
BG55_18915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.903
BG55_04230
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.897
BG55_04275
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.896
BG55_17150
Type VI secretion system protein ImpG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.895
Your Current Organism:
Erwinia mallotivora
NCBI taxonomy Id: 69222
Other names: ATCC 29573, CFBP 2503, CIP 105197, DSM 4565, E. mallotivora, ICMP 5705, LMG 2708, LMG:2708, NCPPB 2851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.