STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG55_08745Transcriptional regulator SgrR; Activates sgrS under glucose-phosphate stress conditions; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)    
Predicted Functional Partners:
BG55_00830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
BG55_07500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
BG55_16465
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
BG55_16045
Flagellar biosynthesis anti-sigma factor FlgM; Regulates the flagellar specific sigma28 transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
uspB
ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
BG55_19420
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
BG55_05875
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
BG55_01215
Hha toxicity attenuator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
BG55_03385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
bssS
Biofilm formation regulatory protein BssS; BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
Your Current Organism:
Erwinia mallotivora
NCBI taxonomy Id: 69222
Other names: ATCC 29573, CFBP 2503, CIP 105197, DSM 4565, E. mallotivora, ICMP 5705, LMG 2708, LMG:2708, NCPPB 2851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.