STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG55_10670Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)    
Predicted Functional Partners:
thiI
tRNA s(4)U8 sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
 0.791
BG55_01055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.599
BG55_03675
Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.572
BG55_19895
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.540
glpE
Thiosulfate sulfurtransferase; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
  
 0.515
BG55_05705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.515
BG55_13610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.492
BG55_06075
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.485
BG55_01420
Xanthine hydroxylase reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.474
BG55_10675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.474
Your Current Organism:
Erwinia mallotivora
NCBI taxonomy Id: 69222
Other names: ATCC 29573, CFBP 2503, CIP 105197, DSM 4565, E. mallotivora, ICMP 5705, LMG 2708, LMG:2708, NCPPB 2851
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