STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG55_21390Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)    
Predicted Functional Partners:
BG55_21395
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.577
BG55_13785
N-acetylmuramoyl-l-alanine amidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.507
BG55_21405
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.479
BG55_21400
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
BG55_00225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.453
amiC
N-acetylmuramoyl-L-alanine amidase; Hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.443
BG55_04090
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
Your Current Organism:
Erwinia mallotivora
NCBI taxonomy Id: 69222
Other names: ATCC 29573, CFBP 2503, CIP 105197, DSM 4565, E. mallotivora, ICMP 5705, LMG 2708, LMG:2708, NCPPB 2851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.