STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD32244.1Helix-turn-helix. (104 aa)    
Predicted Functional Partners:
SMD32243.1
Serine/threonine-protein kinase HipA.
 
 
 0.980
SMD32269.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.661
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.547
SMD31875.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Reichenbachiella faecimaris
NCBI taxonomy Id: 692418
Other names: DSM 26133, JCM 16588, KACC 14523, R. faecimaris, Reichenbachiella faecimaris Cha et al. 2011, Reichenbachiella sp. PCP104, Reichenbachiella sp. PCP11, strain PCP11
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