STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD32507.1Tetratricopeptide repeat-containing protein. (655 aa)    
Predicted Functional Partners:
SMD31868.1
Multi-sensor hybrid histidine kinase.
 
 
0.991
SMD34073.1
Signal transduction histidine kinase.
 
 
0.990
SMD35995.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
   
 0.985
SMD32619.1
GAF sensor signal transduction histidine kinase.
 
 
0.973
SMD31743.1
Hypothetical protein.
   
 0.962
SMD33684.1
PAS domain S-box-containing protein.
 
 
 0.941
SMD32260.1
Signal transduction histidine kinase.
 
 
0.926
SMD33680.1
PAS domain S-box-containing protein.
 
 
 0.919
SMD38882.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
 0.904
SMD36001.1
PAS domain S-box-containing protein.
 
 
 0.895
Your Current Organism:
Reichenbachiella faecimaris
NCBI taxonomy Id: 692418
Other names: DSM 26133, JCM 16588, KACC 14523, R. faecimaris, Reichenbachiella faecimaris Cha et al. 2011, Reichenbachiella sp. PCP104, Reichenbachiella sp. PCP11, strain PCP11
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