STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD38678.1Protein of unknown function. (193 aa)    
Predicted Functional Partners:
SMD38671.1
Peptidase family M48.
       0.788
SMD38675.1
Uncharacterized conserved protein, Tic20 family.
       0.788
SMD31638.1
Hypothetical protein; Partial gene; manually curated.
  
  
  0.733
SMD32034.1
Hypothetical protein.
  
     0.727
SMD39244.1
Hypothetical protein; Partial gene; manually curated.
  
  
  0.713
SMD39165.1
C-terminal domain of CHU protein family protein; Partial gene; manually curated.
  
  
  0.695
SMD34524.1
Hypothetical protein.
  
     0.681
SMD38195.1
Hypothetical protein.
  
     0.647
SMD37916.1
Sporulation related domain-containing protein.
  
     0.643
SMD31639.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.640
Your Current Organism:
Reichenbachiella faecimaris
NCBI taxonomy Id: 692418
Other names: DSM 26133, JCM 16588, KACC 14523, R. faecimaris, Reichenbachiella faecimaris Cha et al. 2011, Reichenbachiella sp. PCP104, Reichenbachiella sp. PCP11, strain PCP11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.