STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaNDNA polymerase III (beta subunit). (378 aa)    
Predicted Functional Partners:
dnaX
DNA polymerase III (gamma and tau subunits).
 
 
 0.998
holB
DNA polymerase III delta' subunit.
 
 0.998
holA
DNA polymerase III, delta subunit; 'DNA replication'.
 
 
 0.998
dnaE
DNA polymerase III (alpha subunit).
  
 
 0.996
dnaA
Chromosomal replication initiator protein DnaA.
 
 0.994
polA3
DNA polymerase I.
 
 0.983
mutS
DNA mismatch repair recognition factor.
  
 0.977
recF
DNA repair and genetic recombination factor.
 
  
 0.969
exoA
5'3'-exonuclease.
  
 0.943
ykoU
ATP-dependent DNA ligase subunit.
   
 0.927
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.