STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacAD-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5). (443 aa)    
Predicted Functional Partners:
dacB
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*).
 
  
 
0.930
ponA
Peptidoglycan glycosyltransferase (penicillin-binding proteins 1A and 1B).
  
 
 0.928
dacF
D-alanyl-D-alanine carboxypeptidase (penicilin binding protein).
  
  
 
0.919
dacC
D-alanyl-D-alanine carboxypeptidase.
     
 0.915
yodJ
D-alanyl-D-alanine carboxypeptidase lipoprotein.
     
 0.911
pbpF
Penicillin-binding protein 2C required for spore germination.
   
 
 0.908
ybbE
Putative protein precursor; similar to beta-lactamase.
     
 0.906
guaB
Inosine-monophosphate dehydrogenase.
       0.562
pdxS
Pyridoxine biosynthesis protein; Pyridoxal biosynthesis lyase pdxS;, Vitamin B6 biosynthesis protein, SOR/SNZ family, TIGR00343: pyridoxine biosynthesis protein.
  
    0.550
yocD
Putative carboxypeptidase.
    
 0.530
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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