STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recRDNA repair and recombination protein. (198 aa)    
Predicted Functional Partners:
recO
DNA double strand break repair and homologous recombination factor.
 
 
 
 0.993
yaaK
DNA binding protein.
  
  
 0.987
recF
DNA repair and genetic recombination factor.
 
 
 0.977
dnaX
DNA polymerase III (gamma and tau subunits).
 
  
 0.916
recG
Branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair.
  
   
 0.846
yaaL
Conserved hypothetical protein.
       0.826
ssbA
Single-strand DNA-binding protein.
  
  
 0.820
recJ
Putative single-strand DNA-specific exonuclease.
 
   
 0.795
recN
Factor for double strand breaks DNA repair and genetic recombination.
 
   
 0.775
recA
Multifunctional SOS repair factor.
 
   
 0.771
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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