STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
holBDNA polymerase III delta' subunit. (329 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III (beta subunit).
 
 0.998
holA
DNA polymerase III, delta subunit; 'DNA replication'.
  
 
 0.997
dnaX
DNA polymerase III (gamma and tau subunits).
 
 
0.994
dnaE
DNA polymerase III (alpha subunit).
    
 0.986
polC
DNA polymerase III (alpha subunit).
     
 0.934
yaaR
Conserved hypothetical protein.
  
    0.927
tmk
Thymidylate kinase.
  
 
 0.922
yabA
Subunit of the DNA replication complex.
 
    0.891
yaaT
Conserved hypothetical protein; 16.3: Control.
  
    0.889
yaaQ
Conserved hypothetical protein.
  
    0.887
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.