STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIEStage II sporulation protein E; Stage II sporulation protein H;, Sporulation stage II, protein E, Stage II sporulation protein E, spore_II_E: stage II sporulation protein E. (832 aa)    
Predicted Functional Partners:
yabS
Conserved hypothetical protein.
 
  
 0.984
yabT
Putative serine/threonine-protein kinase.
 
 
 0.976
spoIIGA
Protease processing pro-sigma-E.
  
  
 0.976
spoIIAB
Anti-sigma factor (antagonist of sigma(F)) and serine kinase.
  
  
 0.934
spoIIR
Stage II sporulation protein R;, Sporulation stage II, protein R, Stage II sporulation protein R (spore_II_R), spore_II_R: stage II sporulation protein R.
  
   
 0.923
spoIIM
Autolysin component for dissolution of the septal cell wall (stage II sporulation).
  
   
 0.887
spoIIAA
Anti-anti-sigma factor (antagonist of SpoIIAB).
  
  
 0.880
spoIIP
Spore autolysin (stage II sporulation).
  
   
 0.872
yabQ
Membrane protein of the forespore.
 
     0.842
spoIIID
Stage III sporulation protein D; 14 kDa transcription factor;, Sporulation stage III, transcriptional regulator SpoIIID, spore_III_D: sporulation transcriptional regulator SpoIIID.
  
   
 0.829
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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