STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbDPutative beta-hexosaminidase, putative lipoprotein. (636 aa)    
Predicted Functional Partners:
ybbE
Putative protein precursor; similar to beta-lactamase.
  
 0.999
ybbC
Conserved hypothetical protein.
 
  
 0.990
murQ
D-lactyl ether N-acetylmuramic-6-phosphate acid etherase.
 
  
 0.956
murP
N-acetyl muramic acid-specific phosphotransferase system, EIIBC component; [KO:K02809 K02810], PTS system sucrose-specific EIIBC component; EIIBC-Scr; EII-Scr; Includes: RecName: Full=Sucrose-specific phosphotransferase enzyme IIB component; PTS system sucrose-specific EIIB component; Includes: RecName: Full=Sucrose permease IIC component; PTS system sucrose-specific EIIC component;, Phosphotransferase system, EIIC component, type 1, Phosphotransferase system, EIIC, PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component.
  
  
 0.727
cwlC
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.641
lytD
Exported N-acetylglucosaminidase (major autolysin) (CWBP90).
  
  
 0.579
nucA
DNA-entry nuclease; Competence-specific nuclease.
  
  
 0.572
nucB
Nuclease.
  
  
 0.572
yqiI
Putative N-acetylmuramoyl-L-alanine amidase.
 
  
  0.563
lytC
N-acetylmuramoyl-L-alanine amidase (major autolysin).
    
 0.557
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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