STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqeBConserved hypothetical protein. (232 aa)    
Predicted Functional Partners:
lip2
Lipase fragment.
  
     0.562
ymcC
Putative integral inner membrane protein.
  
     0.541
yhjC1
Putative exported protein.
  
     0.525
csgA
Sporulation-specific SASP protein.
       0.512
lmrA
HTH-type transcriptional regulator lmrA.
  
     0.508
pksA
Putative transcriptional regulator.
  
     0.494
yoaB
YoaB; 'cell envelope and cellular processes; Transport/binding proteins and lipoproteins', uptake of alpha-ketoglutarate.
  
     0.464
amfT
Ribosomal protein S6 kinase alpha-6; S6K-alpha 6; S6K-alpha 6-like;, Serine/threonine protein kinase.
  
     0.438
yhjB
YhjB; 'cell envelope and cellular processes; Transport/binding proteins and lipoproteins'.
  
     0.435
rapH3
Response regulator aspartate phosphatase.
  
     0.415
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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