STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasFuroporphyrin-III C-methyltransferase. (479 aa)    
Predicted Functional Partners:
hemC
Porphobilinogen deaminase (hydroxymethylbilane synthase).
 0.999
sirC
Precorrin-2 dehydrogenase.
 
 0.996
hemB
Delta-aminolevulinic acid dehydratase (porphobilinogen synthase).
 
 
 0.992
hemD3
Uroporphyrinogen III cosynthase.
 
 0.982
hemE
Uroporphyrinogen III decarboxylase.
  
 
 0.946
nasD
Assimilatory nitrite reductase subunit.
  
 0.938
hemD1
uroporphyrinogen-III synthase.
 
 
 0.934
sumT
Uroporphyrinogen III and precorrin-1 C-methyltransferase.
 
 
0.918
nasE
Assimilatory nitrite reductase subunit.
  
  
 0.915
cysH
(phospho)adenosine phosphosulfate reductase.
 
  
 0.909
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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