STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabT4-aminobutyrate aminotransferase. (435 aa)    
Predicted Functional Partners:
gabD
Succinate-semialdehyde dehydrogenase.
  
 0.995
gabR
Transcriptional regulator (GntR/MocR family) with PLP binding site.
 
  
 0.968
dhaS
DhaS; 'intermediary metabolism; Metabolism of coenzymes and prosthetic groups'.
  
 0.926
mmsA
Methylmalonate-semialdehyde dehydrogenase.
  
 0.926
aldX
Retinal dehydrogenase 1; RALDH 1; RalDH1; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; ALHDII; ALDH-E1;, Aldehyde dehydrogenase, Aldehyde dehydrogenase family, SSADH: succinic semialdehyde dehydrogenase.
  
 0.926
panD
Aspartate 1-decarboxylase.
     
 0.911
ykwC
Putative beta-hydroxyacid dehydrogenase.
     
  0.900
panC
Pantothenate synthetase.
     
 0.900
ituA
Iturin A synthetase A (B. subtilis); 'other functions; Antibiotic production; Nonribosomal synthesis of iturinA'.
  
  
 0.858
citZ
Citrate synthase II.
   
 
 0.839
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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