STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqaJ2Putative nuclease; skin element. (137 aa)    
Predicted Functional Partners:
yqaJ1
Putative nuclease; Uncharacterized protein yqaJ;, putative phage-type endonuclease, YqaJ viral recombinase family.
     0.988
yqaK1
Uncharacterized protein yqaK;, DNA single-strand annealing protein RecT, RecT family, rect: recombinase, phage RecT family.
 
  
 0.957
yqaK3
Uncharacterized protein yqaK;, DNA single-strand annealing protein RecT-like.
 
  
 0.811
BAMF_0557
Similar to phage protein; Protein of unknown function DUF1064, Protein of unknown function (DUF1064).
 
     0.796
BAMF_0549
Hypothetical 6.8Kb protein [Bacillus pumilus ATCC 7061].
       0.705
yqaL
Putative DNA-binding protein; Uncharacterized protein yqaL;, DnaD/phage-associated region, DnaD-like domain.
 
    0.625
yqaM
yqaM hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]; Chromosomal replication initiator protein dnaA;, ATPase, AAA+ type, core.
 
    0.601
xtmA
PBSX defective prophage terminase (small subunit).
  
     0.557
gp6
Portal protein; Portal vertex protein; GP6;, Phage portal protein, SPP1, Phage portal protein, SPP1 Gp6-like, portal_SPP1: phage portal protein, SPP1 family.
  
     0.543
xtmB3
PBSX terminase (large subunit)); Phage DNA replication.
  
     0.536
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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