STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcrA1ATP-dependent DNA helicase. (739 aa)    
Predicted Functional Partners:
ligA
DNA ligase.
 
  
 0.944
helD
Helicase IV;, DNA helicase, UvrD/REP type.
 
  
 0.942
yjcD
Putative ATP-dependent DNA helicase.
  
  
 
0.924
pcrA3
DNA helicase II;, DNA helicase, UvrD/REP type.
  
  
 
0.913
yerH
Putative lipoprotein.
  
  
 0.897
yqxK
Conserved hypothetical protein; 16.1: Circulate16.11: Scavenge (Catabolism).
      0.879
dnaN
DNA polymerase III (beta subunit).
 
 
 0.856
pcrB
(S)-3-O-geranylgeranylglyceryl phosphate synthase.
  
  
 0.843
recA
Multifunctional SOS repair factor.
 
 
 0.842
recQ
ATP-dependent DNA helicase.
 
 
 0.761
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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