STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cotJCProtein cotJC;, Catalase, manganese, Manganese containing catalase. (189 aa)    
Predicted Functional Partners:
cotJB
Protein cotJB.
 
  
 0.998
cotJA
Protein cotJA.
 
 
 0.994
gerQ
Spore coat protein; 'unknown; Similar to unknown proteins from B. subtilis'.
   
  
 0.706
cotE
Morphogenic spore protein.
   
  
 0.672
sodF
SodF; 'other functions; Detoxification', detoxification of oxygen radicals.
   
  
 0.660
spoIVA
Morphogenetic stage IV sporulation protein.
  
  
 0.631
ysxE
Spore coat protein.
   
  
 0.627
spoIIID
Stage III sporulation protein D; 14 kDa transcription factor;, Sporulation stage III, transcriptional regulator SpoIIID, spore_III_D: sporulation transcriptional regulator SpoIIID.
  
    0.621
yesJ
Acetyltransferase, GNAT family; Uncharacterized N-acetyltransferase yesJ;, GCN5-related N-acetyltransferase.
  
    0.585
sodA
Superoxide dismutase.
   
  
 0.573
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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