STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkHPutative integral inner membrane protein with ribonuclease fold. (279 aa)    
Predicted Functional Partners:
yfkJ
Protein-tyrosine-phosphatase.
  
  
 0.942
yfkI
Conserved hypothetical protein.
  
    0.932
yfkK
Conserved hypothetical protein.
       0.697
ywlE
Protein-tyrosine-phosphatase.
  
  
 0.587
chaA
Vacuolar cation/proton exchanger 1; Ca(2+)/H(+) exchanger 1; Ca(2+)/H(+) antiporter CAX1; Protein RARE COLD INDUCIBLE 4;, Calcium/proton exchanger, Sodium/calcium exchanger protein, cax: calcium/proton exchanger.
  
    0.574
ycdG
General stress protein, similar to oligo-1,6-glucosidase; Glucan 1,6-alpha-glucosidase; Dextran glucosidase; Exo-1,6-alpha-glucosidase; Glucodextranase;, Glycoside hydrolase, subgroup, catalytic core, Alpha amylase, catalytic domain, trehalose_treC: alpha,alpha-phosphotrehalase.
  
  
 0.573
csbC
Hexose transporter 2;, Sugar/inositol transporter, Sugar (and other) transporter, SP: MFS transporter, sugar porter (SP) family.
   
    0.552
ykgA
Putative aminohydrolase.
  
    0.551
ywtG
Putative carbohydrate transporter.
   
    0.549
yqhB
Putative membrane associated protein.
  
    0.517
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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