STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkFPutative efflux transporter. (392 aa)    
Predicted Functional Partners:
yttB
Putative efflux transporter.
      
 0.727
chaA
Vacuolar cation/proton exchanger 1; Ca(2+)/H(+) exchanger 1; Ca(2+)/H(+) antiporter CAX1; Protein RARE COLD INDUCIBLE 4;, Calcium/proton exchanger, Sodium/calcium exchanger protein, cax: calcium/proton exchanger.
  
    0.715
yfmI1
Uncharacterized MFS-type transporter yfiS;, Major facilitator superfamily MFS-1.
  
   
 0.502
ygxA
Conserved hypothetical protein.
  
     0.449
yfhP
Putative membrane hydrolase.
  
     0.444
fer
Ferredoxin.
  
     0.442
yfkD
Conserved hypothetical protein.
       0.438
ymcA
Master regulator for biofilm formation.
  
     0.435
ypjA
Putative integral inner membrane protein.
  
     0.432
pbuE
Hypoxanthine efflux transporter.
  
   
 0.413
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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